Commit 6f39a8ed authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixed numberChunks in summary

parent 8dedd28a
...@@ -116,7 +116,7 @@ class Mapping(val root: Configurable) extends QScript with SummaryQScript with S ...@@ -116,7 +116,7 @@ class Mapping(val root: Configurable) extends QScript with SummaryQScript with S
"skip_markduplicates" -> skipMarkduplicates, "skip_markduplicates" -> skipMarkduplicates,
"aligner" -> aligner, "aligner" -> aligner,
"chunking" -> chunking, "chunking" -> chunking,
"numberChunks" -> numberChunks.getOrElse(1) "numberChunks" -> (if (chunking) numberChunks.getOrElse(1) else None)
) ++ (if (root == null) Map("reference" -> referenceSummary) else Map()) ) ++ (if (root == null) Map("reference" -> referenceSummary) else Map())
override def reportClass = { override def reportClass = {
......
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