From 6f39a8ed7b9be0722a5550c1ff55c9a3d85fedf1 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 12 Oct 2015 08:31:20 +0200
Subject: [PATCH] Fixed numberChunks in summary
---
.../scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala b/public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
index b1b0cb5f1..b61893674 100644
--- a/public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
+++ b/public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
@@ -116,7 +116,7 @@ class Mapping(val root: Configurable) extends QScript with SummaryQScript with S
"skip_markduplicates" -> skipMarkduplicates,
"aligner" -> aligner,
"chunking" -> chunking,
- "numberChunks" -> numberChunks.getOrElse(1)
+ "numberChunks" -> (if (chunking) numberChunks.getOrElse(1) else None)
) ++ (if (root == null) Map("reference" -> referenceSummary) else Map())
override def reportClass = {
--
GitLab