Various style fixes

public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala

@@ -17,7 +17,7 @@ package nl.lumc.sasc.biopet.tools
 
 import java.io.{ File, PrintWriter }
 
-import htsjdk.samtools.{SAMSequenceRecord, SamReaderFactory}
+import htsjdk.samtools.{ SAMSequenceRecord, SamReaderFactory }
 import htsjdk.samtools.reference.IndexedFastaSequenceFile
 import htsjdk.variant.variantcontext.VariantContext
 import htsjdk.variant.vcf.VCFFileReader

public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFastaTest.scala

@@ -65,7 +65,6 @@ class BastyGenerateFastaTest extends TestNGSuite with MockitoSugar with Matchers
     val father = mock[Args]
     when(father.sampleName) thenReturn "Father_7006506"
 
-
     getMaxAllele(record)(child) shouldBe "C-"
     getMaxAllele(record)(father) shouldBe "CA"
 

public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/BiopetFlagstatTest.scala

@@ -33,7 +33,7 @@ class BiopetFlagstatTest extends TestNGSuite with MockitoSugar with Matchers {
   processor.loadRecord(record)
 
   @Test
-  def testReport()= {
+  def testReport() = {
     processor.report shouldBe Source.fromFile(report).mkString
   }
 

public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/CheckAllelesVcfInBamTest.scala

@@ -18,7 +18,7 @@ package nl.lumc.sasc.biopet.tools
 import java.io.File
 import java.nio.file.Paths
 
-import htsjdk.samtools.{SamReaderFactory, SamReader}
+import htsjdk.samtools.{ SamReaderFactory, SamReader }
 import htsjdk.variant.vcf.VCFFileReader
 import org.scalatest.Matchers
 import org.scalatest.mock.MockitoSugar

public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/FastqSplitterTest.scala

@@ -36,6 +36,4 @@ class FastqSplitterTest extends TestNGSuite with MockitoSugar with Matchers {
     main(args)
   }
 
-
-
 }

public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/FindRepeatsPacBioTest.scala

@@ -3,7 +3,7 @@ package nl.lumc.sasc.biopet.tools
 import java.io.File
 import java.nio.file.Paths
 
-import htsjdk.samtools.{SamReaderFactory, QueryInterval}
+import htsjdk.samtools.{ SamReaderFactory, QueryInterval }
 import nl.lumc.sasc.biopet.tools.FastqSplitter._
 import org.scalatest.Matchers
 import org.scalatest.mock.MockitoSugar
@@ -60,5 +60,4 @@ class FindRepeatsPacBioTest extends TestNGSuite with MockitoSugar with Matchers
     result.ins shouldEqual Nil
   }
 
-
 }