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Merge branch 'feature-report' into 'develop'
Feature report See also issue #102 Things to do: - [x] implement template library - [ ] General features - [x] Versions template - [x] Intro text sections - [x] Intro text pages - [x] Fix menu - [x] fix sidebar, should highlight current section - [x] Fix sortable tables, @wyleung - [x] Auto scala width on number of samples - [ ] Report for Flexiprep - [x] Files template - [ ] Report for bammetrics, #127 required - [x] Fix insertsize - [ ] Report for Mapping - [x] Files template - [ ] Report for Shiva - [x] Files template - [x] Show tables on click - [ ] Report for Carp - [ ] Setup a generic layout See merge request !149
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- protected/biopet-gatk-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/GatkGeneral.scala 6 additions, 0 deletions.../lumc/sasc/biopet/extensions/gatk/broad/GatkGeneral.scala
- protected/biopet-gatk-pipelines/pom.xml 1 addition, 1 deletionprotected/biopet-gatk-pipelines/pom.xml
- public/bammetrics/pom.xml 1 addition, 1 deletionpublic/bammetrics/pom.xml
- public/bammetrics/src/main/resources/nl/lumc/sasc/biopet/pipelines/bammetrics/alignmentSummary.ssp 90 additions, 0 deletions...umc/sasc/biopet/pipelines/bammetrics/alignmentSummary.ssp
- public/bammetrics/src/main/resources/nl/lumc/sasc/biopet/pipelines/bammetrics/bamMetricsFront.ssp 3 additions, 0 deletions...lumc/sasc/biopet/pipelines/bammetrics/bamMetricsFront.ssp
- public/bammetrics/src/main/resources/nl/lumc/sasc/biopet/pipelines/bammetrics/bamStats.ssp 22 additions, 0 deletions...ces/nl/lumc/sasc/biopet/pipelines/bammetrics/bamStats.ssp
- public/bammetrics/src/main/resources/nl/lumc/sasc/biopet/pipelines/bammetrics/covstatsMultiTable.ssp 67 additions, 0 deletions...c/sasc/biopet/pipelines/bammetrics/covstatsMultiTable.ssp
- public/bammetrics/src/main/resources/nl/lumc/sasc/biopet/pipelines/bammetrics/covstatsPlot.ssp 50 additions, 0 deletions...nl/lumc/sasc/biopet/pipelines/bammetrics/covstatsPlot.ssp
- public/bammetrics/src/main/resources/nl/lumc/sasc/biopet/pipelines/bammetrics/gcBias.ssp 3 additions, 0 deletions...urces/nl/lumc/sasc/biopet/pipelines/bammetrics/gcBias.ssp
- public/bammetrics/src/main/resources/nl/lumc/sasc/biopet/pipelines/bammetrics/insertSize.ssp 93 additions, 0 deletions...s/nl/lumc/sasc/biopet/pipelines/bammetrics/insertSize.ssp
- public/bammetrics/src/main/resources/nl/lumc/sasc/biopet/pipelines/bammetrics/rna.ssp 3 additions, 0 deletions...esources/nl/lumc/sasc/biopet/pipelines/bammetrics/rna.ssp
- public/bammetrics/src/main/resources/nl/lumc/sasc/biopet/pipelines/bammetrics/target.ssp 3 additions, 0 deletions...urces/nl/lumc/sasc/biopet/pipelines/bammetrics/target.ssp
- public/bammetrics/src/main/resources/nl/lumc/sasc/biopet/pipelines/bammetrics/wgsHistogram.ssp 93 additions, 0 deletions...nl/lumc/sasc/biopet/pipelines/bammetrics/wgsHistogram.ssp
- public/bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala 3 additions, 1 deletion...nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala
- public/bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BammetricsReport.scala 256 additions, 0 deletions...c/sasc/biopet/pipelines/bammetrics/BammetricsReport.scala
- public/biopet-framework/pom.xml 8 additions, 3 deletionspublic/biopet-framework/pom.xml
- public/biopet-framework/src/main/resources/nl/lumc/sasc/biopet/core/report/executables.ssp 33 additions, 0 deletions...resources/nl/lumc/sasc/biopet/core/report/executables.ssp
- public/biopet-framework/src/main/resources/nl/lumc/sasc/biopet/core/report/ext/css/bootstrap-theme.min.css 5 additions, 0 deletions...c/sasc/biopet/core/report/ext/css/bootstrap-theme.min.css
- public/biopet-framework/src/main/resources/nl/lumc/sasc/biopet/core/report/ext/css/bootstrap.min.css 5 additions, 0 deletions...nl/lumc/sasc/biopet/core/report/ext/css/bootstrap.min.css
- public/biopet-framework/src/main/resources/nl/lumc/sasc/biopet/core/report/ext/css/bootstrap_dashboard.css 165 additions, 0 deletions...c/sasc/biopet/core/report/ext/css/bootstrap_dashboard.css
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