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Commit 5d8fb79d authored by Peter van 't Hof's avatar Peter van 't Hof
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skip canRead when file does not exist

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public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetQScript.scala
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...@@ -92,7 +92,7 @@ trait BiopetQScript extends Configurable with GatkLogging { ...@@ -92,7 +92,7 @@ trait BiopetQScript extends Configurable with GatkLogging {
inputFiles.foreach { i => inputFiles.foreach { i =>
if (!i.file.exists()) Logging.addError(s"Input file does not exist: ${i.file}") if (!i.file.exists()) Logging.addError(s"Input file does not exist: ${i.file}")
if (!i.file.canRead()) Logging.addError(s"Input file can not be read: ${i.file}") else if (!i.file.canRead()) Logging.addError(s"Input file can not be read: ${i.file}")
} }
reportClass.foreach(add(_)) reportClass.foreach(add(_))
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