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Commit 5b1fc7c4 authored by Sander Bollen's avatar Sander Bollen
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Some toucan extras

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docs/pipelines/toucan.md
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......@@ -22,8 +22,9 @@ Arguments for Toucan:
Configuration
-------------
You can set all the usual [flags and options](http://www.ensembl.org/info/docs/tools/vep/script/vep_options.html) of the VEP in the configuration,
with the same name used by native VEP.
As some of these flags might conflict with other Biopet tools/pipelines, it is wise to put the VEP in its own JSON object.
with the same name used by native VEP, except those added after version 75.
The naming scheme for flags an options is indentical to the one used by the VEP
As some of these flags might conflict with other Biopet tools/pipelines, it is wise to put the VEP in its own namespace.
You **MUST** set the following fields:
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