From 5b1fc7c4942a30c434c7b4864c35871d8e73b1e6 Mon Sep 17 00:00:00 2001
From: Sander Bollen <a.h.b.bollen@lumc.nl>
Date: Tue, 23 Jun 2015 11:09:15 +0200
Subject: [PATCH] Some toucan extras

---
 docs/pipelines/toucan.md | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/docs/pipelines/toucan.md b/docs/pipelines/toucan.md
index dc28ae6e8..633f3cac2 100644
--- a/docs/pipelines/toucan.md
+++ b/docs/pipelines/toucan.md
@@ -22,8 +22,9 @@ Arguments for Toucan:
 Configuration
 -------------
 You can set all the usual [flags and options](http://www.ensembl.org/info/docs/tools/vep/script/vep_options.html) of the VEP in the configuration,
-with the same name used by native VEP.
-As some of these flags might conflict with other Biopet tools/pipelines, it is wise to put the VEP in its own JSON object.
+with the same name used by native VEP, except those added after version 75.
+The naming scheme for flags an options is indentical to the one used by the VEP
+As some of these flags might conflict with other Biopet tools/pipelines, it is wise to put the VEP in its own namespace.
 
 You **MUST** set the following fields:
 
-- 
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