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5933b5a1

Commit 5933b5a1 authored 9 years ago by Peter van 't Hof

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Refactor bed to interval

parent 3f63aefb

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Changes 3

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public/bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala 56 additions, 42 deletions

...nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/bedtools/BedtoolsIntersect.scala 2 additions, 2 deletions

...c/sasc/biopet/extensions/bedtools/BedtoolsIntersect.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/BedToIntervalList.scala 2 additions, 2 deletions

...umc/sasc/biopet/extensions/picard/BedToIntervalList.scala

with 60 additions and 46 deletions

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