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Commit 55c9af30 authored by Peter van 't Hof's avatar Peter van 't Hof
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Fix small bug

parent aca99bf8
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public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
View file @ 55c9af30
...@@ -141,8 +141,8 @@ class Mapping(val root: Configurable) extends QScript with SummaryQScript with S ...@@ -141,8 +141,8 @@ class Mapping(val root: Configurable) extends QScript with SummaryQScript with S
paired = input_R2.isDefined paired = input_R2.isDefined
if (readgroupId == null) readgroupId = sampleId.get + "-" + libId.get if (readgroupId == null)
else if (readgroupId == null) readgroupId = config("readgroup_id") readgroupId = config("readgroup_id", default = sampleId.get + "-" + libId.get)
if (outputName == null) outputName = readgroupId if (outputName == null) outputName = readgroupId
......
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