From 55c9af3094dc44763219c586943c001c31e10a73 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Wed, 7 Oct 2015 17:13:57 +0200
Subject: [PATCH] Fix small bug
---
.../scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala b/public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
index aeff9d559..1495cbf5d 100644
--- a/public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
+++ b/public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
@@ -141,8 +141,8 @@ class Mapping(val root: Configurable) extends QScript with SummaryQScript with S
paired = input_R2.isDefined
- if (readgroupId == null) readgroupId = sampleId.get + "-" + libId.get
- else if (readgroupId == null) readgroupId = config("readgroup_id")
+ if (readgroupId == null)
+ readgroupId = config("readgroup_id", default = sampleId.get + "-" + libId.get)
if (outputName == null) outputName = readgroupId
--
GitLab