Commit 544eb3a0 authored by bow's avatar bow
Browse files

Merge branch 'patch-toucan' into 'develop'

Patch toucan

Fix output directory path in Toucan

See merge request !123
parents 118f09fd a9645551
......@@ -30,7 +30,7 @@ class Toucan(val root: Configurable) extends QScript with BiopetQScript {
def biopetScript(): Unit = {
val vep = new VariantEffectPredictor(this)
vep.input = inputVCF
vep.output = outputDir + inputVCF.getName.stripSuffix(".gz").stripSuffix(".vcf") + ".vep.vcf"
vep.output = new File(outputDir, inputVCF.getName.stripSuffix(".gz").stripSuffix(".vcf") + ".vep.vcf")
vep.isIntermediate = true
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