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Commit 53cc5101 authored by Peter van 't Hof's avatar Peter van 't Hof
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Fix config

parent 80de022e
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generate-indexes/src/main/scala/nl/lumc/sasc/biopet/pipelines/generateindexes/GenerateIndexes.scala
View file @ 53cc5101
...@@ -202,7 +202,7 @@ class GenerateIndexes(val root: Configurable) extends QScript with BiopetQScript ...@@ -202,7 +202,7 @@ class GenerateIndexes(val root: Configurable) extends QScript with BiopetQScript
curl.url = gtfUri.toString curl.url = gtfUri.toString
if (gtfUri.toString.endsWith(".gz")) add(curl | Zcat(this) > outputFile) if (gtfUri.toString.endsWith(".gz")) add(curl | Zcat(this) > outputFile)
else add(curl > outputFile) else add(curl > outputFile)
outputConfig += "annotation_gtf" -> curl.output outputConfig += "annotation_gtf" -> outputFile
outputFile outputFile
} }
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