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biopet.biopet
Commits
53cc5101
Commit
53cc5101
authored
May 17, 2016
by
Peter van 't Hof
Browse files
Fix config
parent
80de022e
Changes
1
Hide whitespace changes
Inline
Side-by-side
generate-indexes/src/main/scala/nl/lumc/sasc/biopet/pipelines/generateindexes/GenerateIndexes.scala
View file @
53cc5101
...
@@ -202,7 +202,7 @@ class GenerateIndexes(val root: Configurable) extends QScript with BiopetQScript
...
@@ -202,7 +202,7 @@ class GenerateIndexes(val root: Configurable) extends QScript with BiopetQScript
curl
.
url
=
gtfUri
.
toString
curl
.
url
=
gtfUri
.
toString
if
(
gtfUri
.
toString
.
endsWith
(
".gz"
))
add
(
curl
|
Zcat
(
this
)
>
outputFile
)
if
(
gtfUri
.
toString
.
endsWith
(
".gz"
))
add
(
curl
|
Zcat
(
this
)
>
outputFile
)
else
add
(
curl
>
outputFile
)
else
add
(
curl
>
outputFile
)
outputConfig
+=
"annotation_gtf"
->
curl
.
output
outputConfig
+=
"annotation_gtf"
->
output
File
outputFile
outputFile
}
}
...
...
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