From 53cc51017e707ce57af220b493d3e9e56ebefabf Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Tue, 17 May 2016 11:44:52 +0200
Subject: [PATCH] Fix config
---
.../sasc/biopet/pipelines/generateindexes/GenerateIndexes.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/generate-indexes/src/main/scala/nl/lumc/sasc/biopet/pipelines/generateindexes/GenerateIndexes.scala b/generate-indexes/src/main/scala/nl/lumc/sasc/biopet/pipelines/generateindexes/GenerateIndexes.scala
index 99f2ea834..4acca6b83 100644
--- a/generate-indexes/src/main/scala/nl/lumc/sasc/biopet/pipelines/generateindexes/GenerateIndexes.scala
+++ b/generate-indexes/src/main/scala/nl/lumc/sasc/biopet/pipelines/generateindexes/GenerateIndexes.scala
@@ -202,7 +202,7 @@ class GenerateIndexes(val root: Configurable) extends QScript with BiopetQScript
curl.url = gtfUri.toString
if (gtfUri.toString.endsWith(".gz")) add(curl | Zcat(this) > outputFile)
else add(curl > outputFile)
- outputConfig += "annotation_gtf" -> curl.output
+ outputConfig += "annotation_gtf" -> outputFile
outputFile
}
--
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