Commit 5396b8df authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

remove catvariants job

parent 6fe734b8
...@@ -81,12 +81,12 @@ class Delly(val root: Configurable) extends QScript with BiopetQScript with Refe ...@@ -81,12 +81,12 @@ class Delly(val root: Configurable) extends QScript with BiopetQScript with Refe
variants.outputFile = this.outputVcf variants.outputFile = this.outputVcf
variants.reference = referenceFasta() variants.reference = referenceFasta()
// add the job // add the job
add(variants) //add(variants)
Some(outputVcf) Some(outputVcf)
} else if (vcfFiles.size == 1) { } else if (vcfFiles.size == 1) {
// TODO: pretify this // TODO: pretify this
val ln = Ln(this, vcfFiles.head._2, this.outputVcf, relative = true) val ln = Ln(this, vcfFiles.head._2, this.outputVcf, relative = true)
add(ln) //add(ln)
Some(ln.output) Some(ln.output)
} else None } else None
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment