The settings above is quite strict and aggressive on the clipping with `cutadapt`. By default the option `sensitiveAdapterSearch` is turned on in the TinyCap pipeline:
```json
"fastqc":{
"sensitiveAdapterSearch":true
}
```
This setting is turned on to enable aggressive adapter trimming. e.g. found (partial) adapters in `FastQC`
are all used in `Cutadapt`. Depending on the sequencing technique and sample preparation, e.g. short
sequences (76bp - 100bp). Turning of this option will still produce sensible results.