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biopet.biopet
Commits
45e7833e
Commit
45e7833e
authored
Feb 12, 2015
by
Peter van 't Hof
Browse files
Format fix
parent
8ca365cb
Changes
1
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala
View file @
45e7833e
...
...
@@ -34,7 +34,6 @@ trait BiopetCommandLineFunctionTrait extends CommandLineFunction with Configurab
@Input
(
doc
=
"deps"
,
required
=
false
)
var
deps
:
List
[
File
]
=
Nil
var
threads
=
0
val
defaultThreads
=
1
...
...
@@ -46,12 +45,12 @@ trait BiopetCommandLineFunctionTrait extends CommandLineFunction with Configurab
* Can override this method. This is executed just before the job is ready to run.
* Can check on run time files from pipeline here
*/
protected
[
core
]
def
beforeCmd
{
}
protected
[
core
]
def
beforeCmd
{}
/**
* Can override this method. This is executed after the script is done en queue starts to generate the graph
*/
protected
[
core
]
def
afterGraph
{
}
protected
[
core
]
def
afterGraph
{}
//TODO: function need rename to beforeGraph
/**
...
...
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