diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala index 2e391520b498205c3230653d4fdbca904ef2217e..498b71c6815d8084ae59107e0bbdee2a6b28429d 100644 --- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala +++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala @@ -34,7 +34,6 @@ trait BiopetCommandLineFunctionTrait extends CommandLineFunction with Configurab @Input(doc = "deps", required = false) var deps: List[File] = Nil - var threads = 0 val defaultThreads = 1 @@ -46,12 +45,12 @@ trait BiopetCommandLineFunctionTrait extends CommandLineFunction with Configurab * Can override this method. This is executed just before the job is ready to run. * Can check on run time files from pipeline here */ - protected[core] def beforeCmd { } + protected[core] def beforeCmd {} /** * Can override this method. This is executed after the script is done en queue starts to generate the graph */ - protected[core] def afterGraph { } + protected[core] def afterGraph {} //TODO: function need rename to beforeGraph /**