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Commit 3eee251f authored by Peter van 't Hof's avatar Peter van 't Hof
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Added dbsnp to config

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generate-indexes/src/main/scala/nl/lumc/sasc/biopet/pipelines/generateindexes/GenerateIndexes.scala
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...@@ -193,6 +193,7 @@ class GenerateIndexes(val root: Configurable) extends QScript with BiopetQScript ...@@ -193,6 +193,7 @@ class GenerateIndexes(val root: Configurable) extends QScript with BiopetQScript
cv.out = new File(annotationDir, "dbsnp.vcf.gz") cv.out = new File(annotationDir, "dbsnp.vcf.gz")
add(cv) add(cv)
outputConfig += "dbsnp" -> cv.out
} }
// Bwa index // Bwa index
......
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