From 397df4591f7e7d93f68b6723620b6f10f8a7ba6a Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 14 Mar 2016 08:23:25 +0100
Subject: [PATCH] Fixed value type
---
.../main/scala/nl/lumc/sasc/biopet/extensions/Freebayes.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Freebayes.scala b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Freebayes.scala
index 70c127592..059785332 100644
--- a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Freebayes.scala
+++ b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Freebayes.scala
@@ -81,7 +81,7 @@ class Freebayes(val root: Configurable) extends BiopetCommandLineFunction with R
var read_max_mismatch_fraction: Option[Int] = config("read_max_mismatch_fraction")
var read_snp_limit: Option[Int] = config("read_snp_limit")
var read_indel_limit: Option[Int] = config("read_indel_limit")
- var min_alternate_fraction: Option[Int] = config("min_alternate_fraction")
+ var min_alternate_fraction: Option[Double] = config("min_alternate_fraction")
var min_alternate_count: Option[Int] = config("min_alternate_count")
var min_alternate_qsum: Option[Int] = config("min_alternate_qsum")
var min_alternate_total: Option[Int] = config("min_alternate_total")
--
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