Fix output

39647fd4 · Peter van 't Hof · b4b21a18 · 39647fd4
Commit 39647fd4 authored Sep 20, 2016 by Peter van 't Hof
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biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/centrifuge/CentrifugeKreport.scala ...sasc/biopet/extensions/centrifuge/CentrifugeKreport.scala +2 -1

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--- a/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/centrifuge/CentrifugeKreport.scala
+++ b/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/centrifuge/CentrifugeKreport.scala
@@ -24,5 +24,6 @@ class CentrifugeKreport(val root: Configurable) extends BiopetCommandLineFunctio
  def cmdLine = executable +
    //TODO: Options
    required("-x", index) +
-    repeat(centrifugeOutputFiles)
+    repeat(centrifugeOutputFiles) +
+    " > " + required(output)
 }