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Commit 38402a6c authored by Peter van 't Hof's avatar Peter van 't Hof
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Fixed nameprefix

parent ba626927
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public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTrait.scala
View file @ 38402a6c
...@@ -86,6 +86,7 @@ trait ShivaVariantcallingTrait extends SummaryQScript ...@@ -86,6 +86,7 @@ trait ShivaVariantcallingTrait extends SummaryQScript
cv.rodPriorityList = callers.map(_.name).mkString(",") cv.rodPriorityList = callers.map(_.name).mkString(",")
for (caller <- callers) { for (caller <- callers) {
caller.inputBams = inputBams caller.inputBams = inputBams
caller.namePrefix = namePrefix
add(caller) add(caller)
addStats(caller.outputFile, caller.name) addStats(caller.outputFile, caller.name)
val normalize: Boolean = config("execute_vt_normalize", default = false, submodule = caller.configName) val normalize: Boolean = config("execute_vt_normalize", default = false, submodule = caller.configName)
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