From 3327c0c8b1f3b060351090a27f9a8ed9409f5322 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Thu, 10 Sep 2015 18:19:20 +0200
Subject: [PATCH] Move executable classes out of the core
---
.../sasc/biopet/{core => }/BiopetExecutableProtected.scala | 4 +++-
.../lumc/sasc/biopet/{core => }/BiopetExecutablePublic.scala | 4 +++-
2 files changed, 6 insertions(+), 2 deletions(-)
rename protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/{core => }/BiopetExecutableProtected.scala (86%)
rename public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/{core => }/BiopetExecutablePublic.scala (96%)
diff --git a/protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutableProtected.scala b/protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutableProtected.scala
similarity index 86%
rename from protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutableProtected.scala
rename to protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutableProtected.scala
index 7b22399d3..34104e8a0 100644
--- a/protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutableProtected.scala
+++ b/protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutableProtected.scala
@@ -3,7 +3,9 @@
* LUMC. Please refer to https://git.lumc.nl/biopet/biopet/wikis/home for instructions
* on how to use this protected part of biopet or contact us at sasc@lumc.nl
*/
-package nl.lumc.sasc.biopet.core
+package nl.lumc.sasc.biopet
+
+import nl.lumc.sasc.biopet.core.{BiopetExecutable, MainCommand}
object BiopetExecutableProtected extends BiopetExecutable {
def pipelines: List[MainCommand] = BiopetExecutablePublic.pipelines ::: List(
diff --git a/public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutablePublic.scala b/public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutablePublic.scala
similarity index 96%
rename from public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutablePublic.scala
rename to public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutablePublic.scala
index 40012aa27..c6461b6d3 100644
--- a/public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutablePublic.scala
+++ b/public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutablePublic.scala
@@ -13,7 +13,9 @@
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
-package nl.lumc.sasc.biopet.core
+package nl.lumc.sasc.biopet
+
+import nl.lumc.sasc.biopet.core.{BiopetExecutable, MainCommand}
object BiopetExecutablePublic extends BiopetExecutable {
def publicPipelines: List[MainCommand] = List(
--
GitLab