From 31bf53d3c70f2855b3d6afdbfb4f79a0d25d7092 Mon Sep 17 00:00:00 2001
From: Sander Bollen <a.h.b.bollen@lumc.nl>
Date: Fri, 28 Aug 2015 10:46:26 +0200
Subject: [PATCH] SageFastqCountTest. Not much to do here.
---
.../biopet/tools/SageCountFastqTest.scala | 30 +++++++++++++++++++
1 file changed, 30 insertions(+)
create mode 100644 public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/SageCountFastqTest.scala
diff --git a/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/SageCountFastqTest.scala b/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/SageCountFastqTest.scala
new file mode 100644
index 000000000..15d3074c9
--- /dev/null
+++ b/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/SageCountFastqTest.scala
@@ -0,0 +1,30 @@
+package nl.lumc.sasc.biopet.tools
+
+import java.io.File
+import java.nio.file.Paths
+
+import org.scalatest.Matchers
+import org.scalatest.mock.MockitoSugar
+import org.scalatest.testng.TestNGSuite
+import org.testng.annotations.Test
+
+/**
+ * Created by ahbbollen on 28-8-15.
+ */
+class SageCountFastqTest extends TestNGSuite with MockitoSugar with Matchers {
+ import SageCountFastq._
+ private def resourcePath(p: String): String = {
+ Paths.get(getClass.getResource(p).toURI).toString
+ }
+
+ val fq = resourcePath("/paired01a.fq")
+
+ @Test
+ def testMain() = {
+ val temp = File.createTempFile("out", ".fastq")
+
+ val args = Array("-I", fq, "-o", temp.getAbsolutePath)
+ main(args)
+ }
+
+}
--
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