Commit 307e9c87 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Format fixed

parent 7f45b476
......@@ -86,7 +86,7 @@ class VcfStats(val root: Configurable) extends ToolCommandFunction with Summariz
Map("info" -> (for (
line <- Source.fromFile(generalStats).getLines().toList.tail;
values = line.split("\t") if values.size >= 2 && !values(0).isEmpty
) yield values(0) -> tryToParseNumber(values(1))
) yield values(0) -> tryToParseNumber(values(1)).getOrElse(None)
).toMap)
}
......@@ -102,7 +102,7 @@ class VcfStats(val root: Configurable) extends ToolCommandFunction with Summariz
for (s <- 1 until data(0).size) {
val sample = data(0)(s)
val stats = Map("genotype" -> (for (f <- 1 until data.length) yield {
data(f)(0) -> tryToParseNumber(data(f)(s))
data(f)(0) -> tryToParseNumber(data(f)(s)).getOrElse(None)
}).toMap)
val sum = new Summarizable {
......
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