Skip to content
Snippets Groups Projects
Commit 307e9c87 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Format fixed

parent 7f45b476
No related branches found
No related tags found
No related merge requests found
......@@ -86,7 +86,7 @@ class VcfStats(val root: Configurable) extends ToolCommandFunction with Summariz
Map("info" -> (for (
line <- Source.fromFile(generalStats).getLines().toList.tail;
values = line.split("\t") if values.size >= 2 && !values(0).isEmpty
) yield values(0) -> tryToParseNumber(values(1))
) yield values(0) -> tryToParseNumber(values(1)).getOrElse(None)
).toMap)
}
......@@ -102,7 +102,7 @@ class VcfStats(val root: Configurable) extends ToolCommandFunction with Summariz
for (s <- 1 until data(0).size) {
val sample = data(0)(s)
val stats = Map("genotype" -> (for (f <- 1 until data.length) yield {
data(f)(0) -> tryToParseNumber(data(f)(s))
data(f)(0) -> tryToParseNumber(data(f)(s)).getOrElse(None)
}).toMap)
val sum = new Summarizable {
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment