Merge branch 'feature-fastq_sync' of git.lumc.nl:biopet/biopet into feature-fastq_sync

291cb0a3 · bow · 109b169e · 80980ae3 · 291cb0a3 · 291cb0a3
Commit 291cb0a3 authored 10 years ago by bow
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala
--- a/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/FastqSyncTest.scala
+++ b/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/FastqSyncTest.scala
--- a/public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutablePublic.scala
+++ b/public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutablePublic.scala
@@ -28,6 +28,7 @@ object BiopetExecutablePublic extends BiopetExecutable {
  def tools: List[MainCommand] = List(
    nl.lumc.sasc.biopet.tools.WipeReads,
    nl.lumc.sasc.biopet.tools.ExtractAlignedFastq,
+    nl.lumc.sasc.biopet.tools.FastqSync,
    nl.lumc.sasc.biopet.tools.BiopetFlagstat,
    nl.lumc.sasc.biopet.tools.CheckAllelesVcfInBam,
    nl.lumc.sasc.biopet.tools.VcfToTsv,