diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala
similarity index 100%
rename from biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala
rename to public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala
diff --git a/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/FastqSyncTest.scala b/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/FastqSyncTest.scala
similarity index 100%
rename from biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/FastqSyncTest.scala
rename to public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/FastqSyncTest.scala
diff --git a/public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutablePublic.scala b/public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutablePublic.scala
index ce9bb97a441c74cf1b34548f4d504364fa752390..914927d407be7a12b64000b803acee62e969ba3c 100644
--- a/public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutablePublic.scala
+++ b/public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutablePublic.scala
@@ -28,6 +28,7 @@ object BiopetExecutablePublic extends BiopetExecutable {
   def tools: List[MainCommand] = List(
     nl.lumc.sasc.biopet.tools.WipeReads,
     nl.lumc.sasc.biopet.tools.ExtractAlignedFastq,
+    nl.lumc.sasc.biopet.tools.FastqSync,
     nl.lumc.sasc.biopet.tools.BiopetFlagstat,
     nl.lumc.sasc.biopet.tools.CheckAllelesVcfInBam,
     nl.lumc.sasc.biopet.tools.VcfToTsv,