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- public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/MergeOtuMaps.scala 15 additions, 0 deletions...c/main/scala/nl/lumc/sasc/biopet/tools/MergeOtuMaps.scala
- public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/ValidateFastq.scala 15 additions, 0 deletions.../main/scala/nl/lumc/sasc/biopet/tools/ValidateFastq.scala
- public/biopet-tools/src/test/resources/flagstat_crossreport.txt 16 additions, 0 deletions.../biopet-tools/src/test/resources/flagstat_crossreport.txt
- public/biopet-tools/src/test/resources/flagstat_crosstrue.txt 16 additions, 0 deletions...ic/biopet-tools/src/test/resources/flagstat_crosstrue.txt
- public/biopet-tools/src/test/resources/flagstat_report.txt 16 additions, 0 deletionspublic/biopet-tools/src/test/resources/flagstat_report.txt
- public/biopet-tools/src/test/resources/flagstat_summary.txt 16 additions, 0 deletionspublic/biopet-tools/src/test/resources/flagstat_summary.txt
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/BaseCounterTest.scala 15 additions, 0 deletions...est/scala/nl/lumc/sasc/biopet/tools/BaseCounterTest.scala
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/GvcfToBedTest.scala 15 additions, 0 deletions.../test/scala/nl/lumc/sasc/biopet/tools/GvcfToBedTest.scala
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/ValidateFastqTest.scala 15 additions, 0 deletions...t/scala/nl/lumc/sasc/biopet/tools/ValidateFastqTest.scala
- public/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/BamUtils.scala 15 additions, 0 deletions...s/src/main/scala/nl/lumc/sasc/biopet/utils/BamUtils.scala
- public/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/LazyCheck.scala 15 additions, 0 deletions.../src/main/scala/nl/lumc/sasc/biopet/utils/LazyCheck.scala
- public/biopet-utils/src/test/scala/nl/lumc/sasc/biopet/utils/BamUtilsTest.scala 15 additions, 0 deletions...c/test/scala/nl/lumc/sasc/biopet/utils/BamUtilsTest.scala
- public/gears/src/main/resources/nl/lumc/sasc/biopet/pipelines/gears/report/ext/js/krona-2.0.js 15 additions, 0 deletions...mc/sasc/biopet/pipelines/gears/report/ext/js/krona-2.0.js
- public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/CombineReads.scala 15 additions, 0 deletions...la/nl/lumc/sasc/biopet/pipelines/gears/CombineReads.scala
- public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/ExtractUnmappedReads.scala 15 additions, 0 deletions...mc/sasc/biopet/pipelines/gears/ExtractUnmappedReads.scala
- public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/Gears.scala 15 additions, 0 deletions...ain/scala/nl/lumc/sasc/biopet/pipelines/gears/Gears.scala
- public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsKraken.scala 15 additions, 0 deletions...ala/nl/lumc/sasc/biopet/pipelines/gears/GearsKraken.scala
- public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsQiimeClosed.scala 15 additions, 0 deletions...l/lumc/sasc/biopet/pipelines/gears/GearsQiimeClosed.scala
- public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsQiimeRtax.scala 15 additions, 0 deletions.../nl/lumc/sasc/biopet/pipelines/gears/GearsQiimeRtax.scala
- public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsReport.scala 15 additions, 0 deletions...ala/nl/lumc/sasc/biopet/pipelines/gears/GearsReport.scala
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