Commit 24d9af80 authored by Wai Yi Leung's avatar Wai Yi Leung

Merge branch 'fix-combinevariants' into 'develop'

Fix for issue #167

See merge request !172
parents 67e03c46 d7eb5cd6
......@@ -46,6 +46,7 @@ class CombineVariants(val root: Configurable) extends Gatk {
}
override def beforeGraph: Unit = {
super.beforeGraph
genotypeMergeOptions match {
case Some("UNIQUIFY") | Some("PRIORITIZE") | Some("UNSORTED") | Some("REQUIRE_UNIQUE") | None =>
case _ => throw new IllegalArgumentException("Wrong option for genotypeMergeOptions")
......
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