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biopet.biopet
Commits
d7eb5cd6
Commit
d7eb5cd6
authored
Jun 21, 2015
by
Peter van 't Hof
Browse files
Fix for issue #167
parent
67e03c46
Changes
1
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Inline
Side-by-side
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/CombineVariants.scala
View file @
d7eb5cd6
...
...
@@ -46,6 +46,7 @@ class CombineVariants(val root: Configurable) extends Gatk {
}
override
def
beforeGraph
:
Unit
=
{
super
.
beforeGraph
genotypeMergeOptions
match
{
case
Some
(
"UNIQUIFY"
)
|
Some
(
"PRIORITIZE"
)
|
Some
(
"UNSORTED"
)
|
Some
(
"REQUIRE_UNIQUE"
)
|
None
=>
case
_
=>
throw
new
IllegalArgumentException
(
"Wrong option for genotypeMergeOptions"
)
...
...
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