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biopet.biopet
Commit d7eb5cd6 authored by Peter van 't Hof's avatar Peter van 't Hof
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Fix for issue #167

parent 67e03c46
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/CombineVariants.scala
View file @ d7eb5cd6
......@@ -46,6 +46,7 @@ class CombineVariants(val root: Configurable) extends Gatk {
}
override def beforeGraph: Unit = {
super.beforeGraph
genotypeMergeOptions match {
case Some("UNIQUIFY") | Some("PRIORITIZE") | Some("UNSORTED") | Some("REQUIRE_UNIQUE") | None =>
case _ => throw new IllegalArgumentException("Wrong option for genotypeMergeOptions")
......
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