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biopet.biopet
Commits
21d64302
Commit
21d64302
authored
Oct 28, 2015
by
Peter van 't Hof
Browse files
Style change
parent
2483b207
Changes
1
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public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala
View file @
21d64302
...
...
@@ -122,8 +122,8 @@ object ShivaReport extends MultisampleReportBuilder {
"Preprocessed bam files"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/mapping/outputBamfiles.ssp"
,
Map
(
"pipelineName"
->
"shiva"
,
"fileTag"
->
"preProcessBam"
)))
++
(
if
(
variantcallingExecuted
)
List
(
"VCF files"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/shiva/outputVcfFiles.ssp"
,
Map
(
"sampleId"
->
None
)))
else
Nil
)
,
Map
())
Map
(
"sampleId"
->
None
)))
else
Nil
)
,
Map
())
/** Single sample page */
def
samplePage
(
sampleId
:
String
,
args
:
Map
[
String
,
Any
])
:
ReportPage
=
{
...
...
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