diff --git a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala index 635e2604f40e4283166e754bb6576ae7fab73d82..1311c313186620324449661615d8775b62e23b68 100644 --- a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala +++ b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala @@ -122,8 +122,8 @@ object ShivaReport extends MultisampleReportBuilder { "Preprocessed bam files" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/mapping/outputBamfiles.ssp", Map("pipelineName" -> "shiva", "fileTag" -> "preProcessBam"))) ++ (if (variantcallingExecuted) List("VCF files" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/shiva/outputVcfFiles.ssp", - Map("sampleId" -> None))) else Nil) - , Map()) + Map("sampleId" -> None))) + else Nil), Map()) /** Single sample page */ def samplePage(sampleId: String, args: Map[String, Any]): ReportPage = {