Merge branch 'feature-gentrap_additions' into 'develop'
Feature gentrap additions This is the latest updates and fixes on the Gentrap pipeline to be compatible with the most recent framework updates. In particular: * Issue #156 is fixed ~ this was due to class initialization problems * Issue #157 is fixed * TopHat alignment results are now merged with its unmapped alignment file, producing the correct statistics * The pipeline is updated with the new reference module. * Redundant CollectRnaSeqMetrics is removed (now using the one from BamMetrics instead). See merge request !181
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