Commit 84b4fbf2 authored by bow's avatar bow
Browse files

Set default config for CollectRnaSeqMetrics RefFlat value

parent 9d2bf4ea
......@@ -68,7 +68,7 @@ class CollectRnaSeqMetrics(val root: Configurable) extends Picard with Summariza
var stopAfter: Option[Long] = config("stop_after")
override def beforeGraph: Unit = {
require(refFlat != null, "RefFlat file must be supplied.")
if (refFlat == null) refFlat = config("refFlat")
val validFlags =
strandSpecificity match {
case Some(s) => require(validFlags.contains(s),
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment