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biopet.biopet
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19b4d9eb08500b20359e3da981fef98af99875fd
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Branches
12
biopet-bios
develop
epic-BIOPET-669
example-tarextract
fix-BIOPET-245
fix-BIOPET-593
fix-BIOPET-724
fix-BIOPET-728
fix-BIOPET-730
fix-BIOPET-782
gonl-GRCh38
master
default
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19
v0.9.0
v0.8.0
BIOS
v0.7.0
v0.6.0
v0.5.0
v0.4.0
v0.4.0-RC2
v0.4.0-RC1
v0.3.2
v0.3.1
v0.3.0
v0.2.0
start-feature-branching
v0.1.4
v0.1.2
v0.1.1
v0.1.0
0.1.0
31 results
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Created with Raphaël 2.2.0
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Parts for the SV calling pipeline, formatting and adding breakdancer as subpipeline
Netbeans config, automatic convert to LF instead of CRLF
Added VcfFilter
Changed arg parsing
Added vcfToTsv module
Fix missing variants
Add VcfToTsv
Fix missed refactor (issue #29)
Reorganize tools
Merge branch 'peter' into 'master'
Fix args
Added CheckAllelesVcfInBam
Fix args
Removed unused import
Merge branch 'bow' into 'master'
Merge branch 'waiyi' into 'master'
Merge from master
Adding tophat
Use TestNGSuite and Matchers in Ln command test
Use TestNGSuite and Matchers in WipeReads test
Use common CLI argument parser for WipeReads
Netbeans configurations on formatting using CheckStyle plugin
Removing unused dependency
Merge commit '243fd59aa7e2cd3600a215bca2a4a53864423adb'
Switched to ToolCommand args parsing
Changed name to commandName
Update general argument parsing
Set default validation stringency to lenient in WipeReads
More unit test for WipeReads
Unused function & comments cleanup in WipeReads
Added scopts library and log4j to ToolCommands
Use orestes.bloomfilter instead of com.twitter.algebird for Bloom filter implementation
Update returned filter function in WipeReads to use SAMRecords only
Automatic class name conversion
Automatic class name conversion
Refactor code
Merge branch 'feat_wipereads' into 'master'
Update retrieveCommand function
Make sure WipeReads also checks for single reads when filtering + writing
Update main interface
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