Update to Queue/GATK 3.2

gatk-genotyping/pom.xml

...a/nl/lumc/sasc/biopet/pipelines/gatk/GatkGenotyping.scala

gatk-variantcalling/pom.xml

.../lumc/sasc/biopet/pipelines/gatk/GatkVariantcalling.scala

gatk/pom.xml

.../main/scala/nl/lumc/sasc/biopet/pipelines/gatk/Gatk.scala

mapping/pom.xml

...ain/scala/nl/lumc/sasc/biopet/function/aligners/Bwa.scala

...in/scala/nl/lumc/sasc/biopet/function/aligners/Star.scala

...scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala

pipeline-template/pom.xml

...c/sasc/biopet/pipelines/bammetrics/PipelineTemplate.scala

pom.xml