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biopet.biopet
Commits
719894d1
Commit
719894d1
authored
Jul 15, 2014
by
Peter van 't Hof
Browse files
Summary is skipped in chunking mode
parent
2e45f064
Changes
1
Hide whitespace changes
Inline
Side-by-side
mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
View file @
719894d1
...
...
@@ -164,7 +164,7 @@ class Mapping(val root:Configurable) extends QScript with BiopetQScript {
if
(!
skipFlexiprep
)
{
flexiprep
.
input_R1
=
fastq_R1
if
(
paired
)
flexiprep
.
input_R2
=
fastq_R2
flexiprep
.
skipSummary
=
true
if
(
chunking
)
flexiprep
.
skipSummary
=
true
flexiprep
.
init
flexiprep
.
runInitialJobs
//flexiprep.biopetScript
...
...
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