Summary is skipped in chunking mode

mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala

@@ -164,7 +164,7 @@ class Mapping(val root:Configurable) extends QScript with BiopetQScript {
       if (!skipFlexiprep) {
         flexiprep.input_R1 = fastq_R1
         if (paired) flexiprep.input_R2 = fastq_R2
-        flexiprep.skipSummary = true
+        if (chunking) flexiprep.skipSummary = true
         flexiprep.init
         flexiprep.runInitialJobs
         //flexiprep.biopetScript