diff --git a/flexiprep/src/main/scala/nl/lumc/sasc/biopet/function/fastq/Fastqc.scala b/flexiprep/src/main/scala/nl/lumc/sasc/biopet/function/fastq/Fastqc.scala index cc48a1682bd22c2a89c305f14b8d7aa933143e9d..ca30614d14f34f6bf0578913af4a9c705946fb62 100644 --- a/flexiprep/src/main/scala/nl/lumc/sasc/biopet/function/fastq/Fastqc.scala +++ b/flexiprep/src/main/scala/nl/lumc/sasc/biopet/function/fastq/Fastqc.scala @@ -62,7 +62,7 @@ object Fastqc { if (filename.endsWith(".gzip")) filename = filename.substring(0, filename.size - 5) if (filename.endsWith(".fastq")) filename = filename.substring(0, filename.size - 6) //if (filename.endsWith(".fq")) filename = filename.substring(0,filename.size - 3) - fastqcCommand.jobOutputFile = new File(outDir + "/" + filename + "_fastqc.zip") + fastqcCommand.output = new File(outDir + "/" + filename + "_fastqc.zip") fastqcCommand.afterGraph return fastqcCommand }