Commit 09103695 authored by Sander van der Zeeuw's avatar Sander van der Zeeuw
Browse files

changes in output folder of MACS single sample runs

parent 14d40b0c
......@@ -96,7 +96,7 @@ class Carp(val root: Configurable) extends QScript with MultiSampleQScript with
val macs2 = new Macs2CallPeak(qscript)
macs2.treatment = bamFile
macs2.name = Some(sampleId)
macs2.outputdir = sampleDir + "macs2/" + sampleId + "/"
macs2.outputdir = sampleDir + File.separator + "macs2" + File.separator + sampleId + File.separator
add(macs2)
}
}
......@@ -123,7 +123,7 @@ class Carp(val root: Configurable) extends QScript with MultiSampleQScript with
macs2.treatment = sample.bamFile
macs2.control = samples(controlId).bamFile
macs2.name = Some(sampleId + "_VS_" + controlId)
macs2.outputdir = sample.sampleDir + "/" + "macs2/" + macs2.name.get + "/"
macs2.outputdir = sample.sampleDir + File.separator + "macs2" + File.separator + macs2.name.get + File.separator
add(macs2)
}
}
......
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