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biopet.biopet
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091036950a021851e76bbf004f6a00f4cf8a0d98
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Branches
12
biopet-bios
develop
epic-BIOPET-669
example-tarextract
fix-BIOPET-245
fix-BIOPET-593
fix-BIOPET-724
fix-BIOPET-728
fix-BIOPET-730
fix-BIOPET-782
gonl-GRCh38
master
default
Tags
19
v0.9.0
v0.8.0
BIOS
v0.7.0
v0.6.0
v0.5.0
v0.4.0
v0.4.0-RC2
v0.4.0-RC1
v0.3.2
v0.3.1
v0.3.0
v0.2.0
start-feature-branching
v0.1.4
v0.1.2
v0.1.1
v0.1.0
0.1.0
31 results
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Created with Raphaël 2.2.0
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fixed var
Properly open and close files in ExtractAlignedFastq
fixed typo
Tweaking setting after testing
Fix error in ExtractAlignedFastq single-end mode where the input file is rewritten
Merge branch 'feature-gentrap_docs' into 'develop'
Merge branch 'patch-versioning' into 'develop'
Update docs in main Gentrap pipeline
Added logger message on retry
Update main help message
Update dirty warning message
Use FullVersion throughout
Use package version in Gentrap
Add nl.lumc.sasc.biopet package object to store package-wide information
Adding removal of old vmem tag from resources
Switch gatk parts to new memory limits
Added a retry method
Change limits to coreMemory
Remove method to set memlimit
Changed memory limit aproach
Added some errors when there is a field conflict
Change setup so it can presume vcf types instead of forcing it to strings. Some style changes. Added support for different inputField and outputField
Fix wrong output setting in CustomVarScan
Set idsorting job as intermediate
Merge branch 'hotfix-v0.3.1'
v0.3.1
v0.3.1
Bump version from 0.3.0 to 0.3.1
Also change dependency for cutadept
Fix dependency bug in flexiprep
Fix incorrectly passed java flags for piped VarScan command
Merge branch 'feature-vcfstats' into 'develop'
Fix variable and add more docs
Merge branch 'patch-varscan' into 'develop'
Fix incorrectly passed java flags for piped VarScan command
Merge branch 'patch-flexiprep' into 'develop'
adding option to only annotate with exact same alt allele
Added sample distributions
Also change dependency for cutadept
Fix dependency bug in flexiprep
Changes fraction of bins
Merge branch 'patch-main_docs' into 'develop'
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