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Commit 06e9a56a authored by bow's avatar bow
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Update report template to output clipped adapter name correctly

parent 7dabaeca
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public/gentrap/src/main/resources/nl/lumc/sasc/biopet/pipelines/gentrap/templates/pdf/lib_seqeval.tex
View file @ 06e9a56a
......@@ -70,11 +70,11 @@ More information about clipping using cutadapt is available on the
((* if lib.flexiprep.stats.clipping_R1 *))
((* if lib.flexiprep.stats.clipping_R1.adapters *))
Read 1 & ((( lib.flexiprep.stats.clipping_R1.num_reads_affected|nice_int )))
((* for adapter, count in lib.flexiprep.stats.clipping_R1.adapters.iteritems() *))
((* for adapter, stat in lib.flexiprep.stats.clipping_R1.adapters.iteritems() *))
((* if loop.first *))
& ((( adapter ))) & ((( count|nice_int )))\\
& ((( adapter ))) & ((( stat[1]|nice_int )))\\
((* else *))
& & ((( adapter ))) & ((( count|nice_int )))\\
& & ((( adapter ))) & ((( stat[1]|nice_int )))\\
((* endif *))
((* endfor *))
((* else *))
......@@ -83,11 +83,11 @@ More information about clipping using cutadapt is available on the
((* if lib.is_paired_end *))
((* if lib.flexiprep.stats.clipping_R2.adapters *))
Read 2 & ((( lib.flexiprep.stats.clipping_R2.num_reads_affected|nice_int )))
((* for adapter, count in lib.flexiprep.stats.clipping_R2.adapters.iteritems() *))
((* for adapter, stat in lib.flexiprep.stats.clipping_R2.adapters.iteritems() *))
((* if loop.first *))
& ((( adapter ))) & ((( count|nice_int )))\\
& ((( adapter ))) & ((( stat[1]|nice_int )))\\
((* else *))
& & ((( adapter ))) & ((( count|nice_int )))\\
& & ((( adapter ))) & ((( stat[1]|nice_int )))\\
((* endif *))
((* endfor *))
((* else *))
......
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