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biopet.biopet
Commits
06e9a56a
Commit
06e9a56a
authored
Mar 07, 2015
by
bow
Browse files
Update report template to output clipped adapter name correctly
parent
7dabaeca
Changes
1
Hide whitespace changes
Inline
Side-by-side
public/gentrap/src/main/resources/nl/lumc/sasc/biopet/pipelines/gentrap/templates/pdf/lib_seqeval.tex
View file @
06e9a56a
...
...
@@ -70,11 +70,11 @@ More information about clipping using cutadapt is available on the
((* if lib.flexiprep.stats.clipping
_
R1 *))
((* if lib.flexiprep.stats.clipping
_
R1.adapters *))
Read 1
&
((( lib.flexiprep.stats.clipping
_
R1.num
_
reads
_
affected|nice
_
int )))
((* for adapter,
coun
t in lib.flexiprep.stats.clipping
_
R1.adapters.iteritems() *))
((* for adapter,
sta
t in lib.flexiprep.stats.clipping
_
R1.adapters.iteritems() *))
((* if loop.first *))
&
((( adapter )))
&
(((
count
|nice
_
int )))
\\
&
((( adapter )))
&
(((
stat[1]
|nice
_
int )))
\\
((* else *))
&
&
((( adapter )))
&
(((
count
|nice
_
int )))
\\
&
&
((( adapter )))
&
(((
stat[1]
|nice
_
int )))
\\
((* endif *))
((* endfor *))
((* else *))
...
...
@@ -83,11 +83,11 @@ More information about clipping using cutadapt is available on the
((* if lib.is
_
paired
_
end *))
((* if lib.flexiprep.stats.clipping
_
R2.adapters *))
Read 2
&
((( lib.flexiprep.stats.clipping
_
R2.num
_
reads
_
affected|nice
_
int )))
((* for adapter,
coun
t in lib.flexiprep.stats.clipping
_
R2.adapters.iteritems() *))
((* for adapter,
sta
t in lib.flexiprep.stats.clipping
_
R2.adapters.iteritems() *))
((* if loop.first *))
&
((( adapter )))
&
(((
count
|nice
_
int )))
\\
&
((( adapter )))
&
(((
stat[1]
|nice
_
int )))
\\
((* else *))
&
&
((( adapter )))
&
(((
count
|nice
_
int )))
\\
&
&
((( adapter )))
&
(((
stat[1]
|nice
_
int )))
\\
((* endif *))
((* endfor *))
((* else *))
...
...
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