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Update Picard metrics parsing to better handle nonexistent files
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- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectAlignmentSummaryMetrics.scala 12 additions, 12 deletions...et/extensions/picard/CollectAlignmentSummaryMetrics.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectInsertSizeMetrics.scala 6 additions, 4 deletions...c/biopet/extensions/picard/CollectInsertSizeMetrics.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectRnaSeqMetrics.scala 7 additions, 7 deletions.../sasc/biopet/extensions/picard/CollectRnaSeqMetrics.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/MarkDuplicates.scala 12 additions, 12 deletions...l/lumc/sasc/biopet/extensions/picard/MarkDuplicates.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/Picard.scala 13 additions, 8 deletions.../scala/nl/lumc/sasc/biopet/extensions/picard/Picard.scala
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