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biopet.biopet
Commits
03360822
Commit
03360822
authored
May 15, 2016
by
Peter van 't Hof
Browse files
Remove old comment
parent
5eb775cb
Changes
1
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Inline
Side-by-side
mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMapping.scala
View file @
03360822
...
...
@@ -171,8 +171,7 @@ trait MultisampleMappingTrait extends MultiSampleQScript
"Sample readgroup and/or library of input bamfile is not correct, file: "
+
bamFile
+
"\nPlease note that it is possible to set 'correct_readgroups' to true in the config to automatic fix this"
)
if
(!
dictOke
)
Logging
.
addError
(
"Sequence dictionary in the bam file is not the same as the reference, file: "
+
bamFile
+
"\nPlease note that it is possible to set 'correct_dict' to true in the config to automatic fix this"
)
"Sequence dictionary in the bam file is not the same as the reference, file: "
+
bamFile
)
if
(!
readGroupOke
&&
correctReadgroups
)
{
logger
.
info
(
"Correcting readgroups, file:"
+
inputBam
.
get
)
...
...
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