diff --git a/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMapping.scala b/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMapping.scala index 4c039383a778fddb4e373bf00aac4acbd493c234..306152341be07d1e22aba08b7eacc977f7365435 100644 --- a/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMapping.scala +++ b/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMapping.scala @@ -171,8 +171,7 @@ trait MultisampleMappingTrait extends MultiSampleQScript "Sample readgroup and/or library of input bamfile is not correct, file: " + bamFile + "\nPlease note that it is possible to set 'correct_readgroups' to true in the config to automatic fix this") if (!dictOke) Logging.addError( - "Sequence dictionary in the bam file is not the same as the reference, file: " + bamFile + - "\nPlease note that it is possible to set 'correct_dict' to true in the config to automatic fix this") + "Sequence dictionary in the bam file is not the same as the reference, file: " + bamFile) if (!readGroupOke && correctReadgroups) { logger.info("Correcting readgroups, file:" + inputBam.get)