Commits · 98e005fb792917bd84dce7845607c498bda78358 · Martin Larralde / LightMotif · GitLab

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May 04, 2023
- Add `target_feature` attributes for SSSE3 and AVX2 code · 98e005fb
  Martin Larralde authored May 4, 2023
  
  98e005fb
- Remove multiple compilation units from `lightmotif-py` · 9beab6cd
  Martin Larralde authored May 4, 2023
  
  9beab6cd
- Reorganize conditional compilation of AVX2 code in `lightmotif` crate · 9fbade7d
  Martin Larralde authored May 4, 2023
  
  9fbade7d
- Fix permissions for the `release-a-changelog` action [ci skip] · 868f2198
  Martin Larralde authored May 4, 2023
  
  868f2198
- Release v0.1.1 · ab2ee8f9
  Martin Larralde authored May 4, 2023
  
  View commits for tag v0.1.1 v0.1.1
  
  ab2ee8f9
- Make `unittest.rs` wrapper use the generic Python implementation · 2daa049e
  Martin Larralde authored May 4, 2023
  
  2daa049e
- Setup a helper crate to perform CPU feature detection on Python module import · 85627565
  Martin Larralde authored May 4, 2023
  
  85627565
- Add links to Rust documentation in the crates `README.md` [ci skip] · 381f816c
  Martin Larralde authored May 4, 2023
  
  381f816c
- Remove `built` dependency from `lightmotif-py` to simplify build process · d5ea9458
  Martin Larralde authored May 4, 2023
  
  d5ea9458
- Merge steps for publishing crates in `rust.yml` Actions workflow · d70296f0
  Martin Larralde authored May 4, 2023
  
  d70296f0
- Update `python.yml` Actions workflow to tests wheels after build · d6cd8075
  Martin Larralde authored May 4, 2023
  
  d6cd8075
- Release v0.1.0 · fbfb347b
  Martin Larralde authored May 3, 2023
  
  View commits for tag v0.1.0 v0.1.0
  
  fbfb347b
- Fix conditional build of AVX2 module · 41857327
  Martin Larralde authored May 3, 2023
  
  41857327
- Improve documentation and metadata across all crates · 83998d54
  Martin Larralde authored May 3, 2023
  
  83998d54
- Add a sequence logo SVG to use in `README.md` [ci skip] · 97859bf4
  Martin Larralde authored May 3, 2023
  
  97859bf4
May 03, 2023
- Fix compilation on non-x86 platforms · 131f86fc
  Martin Larralde authored May 3, 2023
  
  131f86fc
- Remove `archspec` requirement in `lightmotif-py` · 7250d117
  Martin Larralde authored May 3, 2023
  
  7250d117
- Remove `#![feature]` attribute from `lightmotif` · 784d54d3
  Martin Larralde authored May 3, 2023
  
  784d54d3
- Split CI for Rust and Python into two separate Actions workflows · fb34d307
  Martin Larralde authored May 3, 2023
  
  fb34d307
- Update `setup.py` to build a fat wheel with both AVX2 and generic library · f82ca5b5
  Martin Larralde authored May 3, 2023
  
  f82ca5b5
- Reorganize project to allow building Python package from the main repository · 5ad505bd
  Martin Larralde authored May 3, 2023
  
  5ad505bd
- Update `lightmotif-py` to mimick the `Bio.motifs` interface · bd04910b
  Martin Larralde authored May 3, 2023
  
  bd04910b
- Add method to explicitly convert a `WeightMatrix` to a `ScoringMatrix` · 45594c0a
  Martin Larralde authored May 3, 2023
  
  45594c0a
- Add method for rescaling a weight matrix with different background probabilities · c7bee48d
  Martin Larralde authored May 3, 2023
  
  c7bee48d
- Remove vector type from `StripedScores` · 9c81edb3
  Martin Larralde authored May 3, 2023
  
  9c81edb3
- Rewrite `Pipeline` using trait objects for generic implementation · 3c8d6221
  Martin Larralde authored May 3, 2023
  
  3c8d6221
- Inline indexing trait implementations of `DenseMatrix` · 2e531a0b
  Martin Larralde authored May 3, 2023
  
  2e531a0b
- Make remaining fields of `StripedScores` private · 93c68822
  Martin Larralde authored May 3, 2023
  
  93c68822
- Add a validating constructor for `Background` · 0a324a20
  Martin Larralde authored May 3, 2023
  
  0a324a20
- Add `Error` trait impls to `InvalidSymbol` and `InvalidData` · 0d1484c5
  Martin Larralde authored May 3, 2023
  
  0d1484c5
- Allow threads when computing scores in Python code · 4ad4181c
  Martin Larralde authored May 2, 2023
  
  4ad4181c
- Add `unittest` for Python bindings with a Rust harness loader · 26eb25ab
  Martin Larralde authored May 2, 2023
  
  26eb25ab
- Add experimental Python bindings using PyO3 · 692be1bc
  Martin Larralde authored May 2, 2023
  
  692be1bc
- Reorganize `StripedScores` to share code between vector implementations · 47cd1dce
  Martin Larralde authored May 2, 2023
  
  47cd1dce
May 02, 2023
- Add position indexing for `StripedScores` · fb333629
  Martin Larralde authored May 2, 2023
  
  fb333629
- Deinterlace scores in AVX2 pipeline implementation · 8b30e18f
  Martin Larralde authored May 2, 2023
  
  8b30e18f
- Add more conversion traits to `lightmotif` structs · e263bbd9
  Martin Larralde authored May 2, 2023
  
  e263bbd9
- Rename `ProbabilityMatrix` to `FrequencyMatrix` and improve public API · 557d01e4
  Martin Larralde authored May 2, 2023
  
  557d01e4
- Add methods to iterate over the rows of a dense matrix · ec53c9c8
  Martin Larralde authored May 2, 2023
  
  ec53c9c8
- Reorganize project and move error class to `lightmotif::err` module · a5a1526a
  Martin Larralde authored May 2, 2023
  
  a5a1526a