Commit d108d994 authored by van den Berg's avatar van den Berg
Browse files

Add testcases for known sites

parent 2fa4b6d6
......@@ -39,3 +39,31 @@
- "/very/unlikely/to/exist does not exist"
tags:
- sanity
- name: test-known-sites-does-not-exist
command: >
snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
REFERENCE=Snakefile JAVA=Snakefile GATK=Snakefile DBSNP=Snakefile
ONETHOUSAND=Snakefile HAPMAP=Snakefile
SAMPLE_CONFIG=Snakefile
KNOWN_SITES=/very/unlikely/to/exist
exit_code: 1
stdout:
contains:
- "/very/unlikely/to/exist does not exist"
tags:
- sanity
- name: test-known-sites-any-does-not-exist
command: >
snakemake -n -r -p -s Snakefile --config OUTPUT_DIR=/test/
REFERENCE=Snakefile JAVA=Snakefile GATK=Snakefile DBSNP=Snakefile
ONETHOUSAND=Snakefile HAPMAP=Snakefile
SAMPLE_CONFIG=Snakefile
KNOWN_SITES=Snakefile,/very/unlikely/to/exist
exit_code: 1
stdout:
contains:
- "/very/unlikely/to/exist does not exist"
tags:
- sanity
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