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Commit 13c8b853 authored by Sander Bollen's avatar Sander Bollen
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use vtools container for merge-stats due to dependency on click

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......@@ -706,7 +706,7 @@ rule merge_stats:
mpy=mpy
output:
stats="stats.json"
singularity: "docker://python:3.6-slim"
singularity: "docker://quay.io/biocontainers/vtools:1.0.0--py37h3010b51_0"
conda: "envs/collectstats.yml"
shell: "python {input.mpy} --vcfstats {input.vstat} {input.cols} "
"> {output.stats}"
......@@ -719,7 +719,7 @@ rule stats_tsv:
sc=tsvpy
output:
stats="stats.tsv"
singularity: "docker://quay.io/biocontainers/vtools:1.0.0--py37h3010b51_0"
singularity: "docker://python:3.6-slim"
conda: "envs/collectstats.yml"
shell: "python {input.sc} -i {input.stats} > {output.stats}"
......
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