Explore projects

Supporting material for our programming course

Mirror of https://github.com/LOVDnl/LOVD3.git

LacyTools with some fixes

Automated and parallelised workflow to assemble PacBio HiFi reads of bacteria whole-genome sequencing. Also subsamples reads before assembly and re-orients resulting contigs to the 'correct' starting position.

Mirror of https://github.com/mutalyzer/backtranslate.git

A collection of semi-reusable scripts, which are not part of any official toolchain

Mirror of https://github.com/LUMC/mutalyzer.git

RNA-seq pipeline for AML diagnostics. Illustration from Anatomy & Physiology, licenced under the Creative Commons Attribution 3.0 Unported

MassyTools, ported to Python 3

Flask web application for PONGS project.

Repository for Jianhui's snakemake pipeline

Repository containing a Snakemake ChIPseq pipeline for SE and PE datasets

Functional metagenomics analysis using the HUMAnN tool version 3

Code and tables for translation from variants to haplotypes.