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Website and materials for our Git courses

Analyses of antimicrobial resistance genes in metagenomic data from patients with (multiple) recurrent Clostridioides difficile infections and their faecal microbiota transplantation donors - with culture data from multidrug resistant organisms

Engraftment calculations based on One Codex species-level taxonomic classifications of shotgun metagenomic read sets of the FECBUD trial - a collaboration between the Netherlands Donor Feces Bank and Vedanta Biosciences.

This repository gather all genomics data and analysis we performed on Zbtb24 in mouse embryonic stem cells.

Mirror of https://github.com/LUMC/mutalyzer.git

Flask web application for PONGS project.

Functional metagenomics analysis using the HUMAnN tool version 3

Public repository containing the code for the open source WebGL viewer based on BabylonJS

Microbiota analyses of metagenomic samples of ulcerative colitis patients and fecal microbiota transplantation donors in the FECBUD trial

HGVS variant nomenclature checker

Analysis scripts used to analyse the procarcinogenic pks gene island in metagenomes of multiple recurrent Clostridioides difficile infected patients and their corresponding healthy donors from the Netherlands Donor Feces Bank.

A web interface to the Varda database for genomic variation frequencies

This project is a fork of https://github.com/varda/aule.git

Some old code for visualizing mtDNA SNPs

Interface generator for command line programs

Data analysis tools for Next Generation Sequencing of forensic DNA markers, including tools for characterisation and filtering of PCR stutter artefacts and other systemic noise, and for automatic detection of the alleles in a sample.