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courses / Git course
Creative Commons Attribution 4.0 InternationalWebsite and materials for our Git courses
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Martin Larralde / Scoring Matrices
MIT LicenseDependency free, Cython-compatible scoring matrices to use with biological sequences.
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Martin Larralde / PyTantan
GNU General Public License v3.0 onlyCython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.
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Mirrors / LOVD3
GNU General Public License v3.0 or laterMirror of https://github.com/LOVDnl/LOVD3.git
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Martin Larralde / NAFcodec
MIT LicenseRust coder/decoder for Nucleotide Archival Format (NAF) files.
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OptoCoil / EMRG_PC
GNU General Public License v3.0 or laterUpdatedUpdated -
OptoCoil / EMRG_Firmware
GNU General Public License v3.0 or laterUpdatedUpdated -
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Sam Nooij / R. gnavus comparative genomics
BSD 3-Clause "New" or "Revised" LicenseComparative genomics project of Ruminococcus gnavus, with additional prevalence and abundance analysis of worldwide metagenomic datasets.
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Sam Nooij / R. gnavus MAGs from rCDI patients
BSD 3-Clause "New" or "Revised" LicenseGenerate metagenome-assembled genomes of Ruminococcus gnavus from recurrent Clostridioides difficile infected patient metagenomes
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Sam Nooij / Pacbio Assembly Benchmark
BSD 3-Clause "New" or "Revised" LicenseUpdated -
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Martin Larralde / Diced
GNU General Public License v3.0 onlyRust re-implementation of the MinCED algorithm to Detect Instances of CRISPRs in Environmental Data.
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Martin Larralde / Peptides.py
GNU General Public License v3.0 onlyPhysicochemical properties and indices for amino-acid sequences (ported from R).
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