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A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

Gene Clusters with Conditional Random Fields.

Cython bindings and Python interface to HMMER3.

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes.

Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.

Cython bindings and Python interface to Jess, a 3D template matching software.

Automated and parallelised workflow to assemble PacBio HiFi reads of bacteria whole-genome sequencing. Also subsamples reads before assembly and re-orients resulting contigs to the 'correct' starting position.